Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003312.1 Kokia drynarioides strain JFW-HI SEQ_115999, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4912
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30


Found at i:3829 original size:19 final size:19

Alignment explanation


    Indices: 3802--3854  Score: 72
    Period size: 19  Copynumber: 2.8  Consensus size: 19

       3792 TCAAAAATTT

                                
       3802 GTTTTTGTTGAAG-TTGTGG
          1 GTTTTTGTTGAAGTTTGT-G

                *              
       3821 GTTTGTGTTGAAGTTTGTG
          1 GTTTTTGTTGAAGTTTGTG

                   *       
       3840 GTTTTTGCTGAAGTT
          1 GTTTTTGTTGAAGTT

       3855 AAGAAAAAAA


Statistics
Matches: 30,  Mismatches: 3, Indels: 2
        0.86            0.09        0.06

Matches are distributed among these distances:
  19   26  0.87
  20    4  0.13

ACGTcount: A:0.11, C:0.02, G:0.34, T:0.53


Consensus pattern (19 bp):   
GTTTTTGTTGAAGTTTGTG
Done.