Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003313.1 Kokia drynarioides strain JFW-HI SEQ_116002, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3573
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33


Found at i:1400 original size:26 final size:26

Alignment explanation


    Indices: 1330--1401  Score: 67
    Period size: 25  Copynumber: 2.8  Consensus size: 26

       1320 ATATCTGATG

                                    *  
       1330 CTGAAAAATAAAT-GACAAACTAATTA
          1 CTGAAAAATAAATAG-CAAACTAAGTA

                   **     **          
       1356 CTG-AAAGCAAATAATAAACTAAGTA
          1 CTGAAAAATAAATAGCAAACTAAGTA

                           *     
       1381 CTGAAAAATAAATAGGAAACT
          1 CTGAAAAATAAATAGCAAACT

       1402 GTAAATGGTA


Statistics
Matches: 35,  Mismatches: 9, Indels: 4
        0.73            0.19        0.08

Matches are distributed among these distances:
  25   19  0.54
  26   16  0.46

ACGTcount: A:0.57, C:0.11, G:0.11, T:0.21


Consensus pattern (26 bp):   
CTGAAAAATAAATAGCAAACTAAGTA
Done.