Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003319.1 Kokia drynarioides strain JFW-HI SEQ_116012, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1751
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42


Found at i:432 original size:20 final size:19

Alignment explanation


    Indices: 399--442  Score: 54
    Period size: 20  Copynumber: 2.3  Consensus size: 19

        389 TGTTTCTAAA

                                
        399 TTTATATATATTTTTAAGTT
          1 TTTATATATATTTTTAA-TT

                            *   
        419 TTTATATACT-TTTTTTATT
          1 TTTATATA-TATTTTTAATT

                 
        438 TTTAT
          1 TTTAT

        443 TTTTTCAATG


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  19    7  0.32
  20   14  0.64
  21    1  0.05

ACGTcount: A:0.25, C:0.02, G:0.02, T:0.70


Consensus pattern (19 bp):   
TTTATATATATTTTTAATT

Found at i:869 original size:12 final size:13

Alignment explanation


    Indices: 837--869  Score: 50
    Period size: 13  Copynumber: 2.6  Consensus size: 13

        827 TTTTTTTAAA

                 *       
        837 ATTTACTACTTTT
          1 ATTTATTACTTTT

                         
        850 ATTTATTACTTTT
          1 ATTTATTACTTTT

                    
        863 A-TTATTA
          1 ATTTATTA

        870 AAATACGACG


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  12    6  0.32
  13   13  0.68

ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64


Consensus pattern (13 bp):   
ATTTATTACTTTT
Done.