Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003323.1 Kokia drynarioides strain JFW-HI SEQ_116019, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 741

Length: 1235
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33


Found at i:645 original size:17 final size:17

Alignment explanation


    Indices: 625--667  Score: 50
    Period size: 17  Copynumber: 2.5  Consensus size: 17

        615 AAATGAACTA

                *      *     
        625 ACAAGTAAAATGCAACG
          1 ACAACTAAAATACAACG

                           * 
        642 ACAACTAAAATACAATG
          1 ACAACTAAAATACAACG

                *    
        659 ACAATTAAA
          1 ACAACTAAA

        668 TGAGATGCAT


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  17   22  1.00

ACGTcount: A:0.58, C:0.16, G:0.09, T:0.16


Consensus pattern (17 bp):   
ACAACTAAAATACAACG
Done.