Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003333.1 Kokia drynarioides strain JFW-HI SEQ_116035, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3681
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34


Found at i:3065 original size:24 final size:25

Alignment explanation


    Indices: 3038--3096  Score: 59
    Period size: 24  Copynumber: 2.4  Consensus size: 25

       3028 ATTTAAACTC

                                  *  
       3038 TATTTTTTAGGA-TTAATATTATTA
          1 TATTTTTTAGGATTTAATATTAATA

                *     *       *      
       3062 TATTGTTTA-TATTTAATTTTAATA
          1 TATTTTTTAGGATTTAATATTAATA

               *       
       3086 TATCTTTTAGG
          1 TATTTTTTAGG

       3097 CTTTGTAATT


Statistics
Matches: 26,  Mismatches: 7, Indels: 3
        0.72            0.19        0.08

Matches are distributed among these distances:
  23    1  0.04
  24   25  0.96

ACGTcount: A:0.31, C:0.02, G:0.08, T:0.59


Consensus pattern (25 bp):   
TATTTTTTAGGATTTAATATTAATA
Done.