Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003336.1 Kokia drynarioides strain JFW-HI SEQ_116038, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 867

Length: 1445
ACGTcount: A:0.34, C:0.19, G:0.10, T:0.37


Found at i:361 original size:23 final size:22

Alignment explanation


    Indices: 262--411  Score: 126
    Period size: 23  Copynumber: 6.5  Consensus size: 22

        252 CGAAGTACTT

                         *            
        262 AACAGTAAGCACATAAGTGCTGGGGA
          1 AACAGTAAGCACACAAGTGC----GA

                                   
        288 AACAGTAAGCACACACAGTGC-A
          1 AACAGTAAGCACACA-AGTGCGA

             *     *  *    *       
        310 ATCAGTAGGCGCACATG-GCGCA
          1 AACAGTAAGCACACAAGTGCG-A

                    *               
        332 AATCAGTAGGCACACGAAGTGCGA
          1 AA-CAGTAAGCACAC-AAGTGCGA

                                   
        356 AACAGTAAGCACACGAAGTGCGA
          1 AACAGTAAGCACAC-AAGTGCGA

                                    
        379 AACAGTAAGCACACACAGTGCTG-
          1 AACAGTAAGCACACA-AGTGC-GA

                      
        402 AACAGTAAGC
          1 AACAGTAAGC

        412 GCACTAGCGT


Statistics
Matches: 107,  Mismatches: 9, Indels: 19
        0.79            0.07        0.14

Matches are distributed among these distances:
  20    2  0.02
  21    1  0.01
  22   16  0.15
  23   60  0.56
  24    6  0.06
  25    3  0.03
  26   14  0.13
  27    5  0.05

ACGTcount: A:0.39, C:0.23, G:0.26, T:0.12


Consensus pattern (22 bp):   
AACAGTAAGCACACAAGTGCGA

Done.