Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003337.1 Kokia drynarioides strain JFW-HI SEQ_116039, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1797
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:266 original size:22 final size:22

Alignment explanation


    Indices: 241--282  Score: 66
    Period size: 22  Copynumber: 1.9  Consensus size: 22

        231 GTTTTTGAAG

                                  
        241 TTTTAAATTTATTTTTCAATAC
          1 TTTTAAATTTATTTTTCAATAC

                 **             
        263 TTTTATTTTTATTTTTCAAT
          1 TTTTAAATTTATTTTTCAAT

        283 GATTACAATG


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67


Consensus pattern (22 bp):   
TTTTAAATTTATTTTTCAATAC
Done.