genome.fa.s3344.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003344.1 Kokia drynarioides strain JFW-HI SEQ_116053, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114773

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4389--4522	45	2.9	46	82	7	164	52	11	5	30	1.58
4594--4632	17	2.4	17	86	4	53	41	10	5	43	1.61
4716--4761	23	2.0	23	100	0	92	65	4	0	30	1.12
4982--5018	12	3.1	12	88	11	58	70	5	0	24	1.08
4982--5018	11	3.0	13	84	15	60	70	5	0	24	1.08
5031--5064	12	2.8	12	86	0	50	0	29	0	70	0.87
7545--7595	19	2.6	20	82	11	61	39	1	1	56	1.22
7541--7599	10	6.0	10	77	15	61	38	1	1	57	1.19
28478--28559	40	2.2	40	82	8	100	32	2	1	63	1.15
28649--28696	19	2.5	20	93	3	80	47	0	0	52	1.00
28708--28732	4	6.2	4	100	0	50	28	0	0	72	0.86
28667--28728	25	2.5	25	78	5	72	37	1	0	61	1.06
30163--30187	9	2.8	9	100	0	50	24	28	0	48	1.52
31291--31321	16	1.9	16	93	0	53	51	0	0	48	1.00
31350--31390	15	2.9	15	82	17	52	56	2	0	41	1.13
42205--42289	42	2.0	42	95	0	152	25	18	9	45	1.79
43843--43940	48	2.0	48	86	0	133	40	14	10	34	1.79
44777--44801	12	2.1	12	100	0	50	52	8	0	40	1.31
45276--45508	63	3.7	62	87	2	340	27	24	22	26	2.00
45566--45612	24	2.0	24	91	0	76	21	27	34	17	1.95
45973--46030	18	3.4	18	64	22	52	34	51	8	5	1.55
45948--46080	33	4.0	33	88	0	176	29	49	8	12	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52950--52983	8	4.1	8	88	3	50	82	0	14	2	0.79
54954--55002	22	2.2	24	85	10	68	26	2	0	71	0.97
56060--56093	13	2.5	14	90	4	52	32	0	0	67	0.91
56249--56281	15	2.1	16	88	5	50	45	0	0	54	0.99
56244--56286	22	2.0	21	82	8	52	41	2	0	55	1.12
56322--56356	16	2.2	16	89	0	52	28	5	2	62	1.32
59359--59505	63	2.6	53	77	20	170	49	6	0	44	1.27
59380--59512	63	2.1	64	94	1	232	53	5	0	41	1.23
60039--60350	40	7.9	38	68	13	123	25	18	26	30	1.98
60039--60350	79	3.9	78	86	2	408	25	18	26	30	1.98
60039--60230	40	4.9	38	69	12	127	24	17	26	31	1.97
66207--66299	23	4.3	23	71	20	85	10	22	22	44	1.84
68269--68348	31	2.6	31	84	3	101	38	11	20	30	1.87
70821--70977	67	2.4	66	87	7	225	50	5	1	42	1.35
72479--72505	3	9.0	3	100	0	54	66	0	0	33	0.92
73710--73748	5	7.8	5	100	0	78	41	0	58	0	0.98
81626--81676	21	2.4	22	83	6	61	33	3	1	60	1.26
98710--98748	21	1.9	20	89	5	60	35	10	0	53	1.35
98892--98921	6	5.0	6	100	0	60	50	16	16	16	1.79
111883--111912	16	1.9	16	93	6	53	76	0	23	0	0.78
111907--111939	5	6.8	5	86	6	50	81	0	18	0	0.68
111883--111955	6	12.3	6	73	12	53	79	0	17	2	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112873--113049	50	3.5	50	83	6	214	37	16	24	21	1.93
113104--113956	80	10.7	80	87	0	1147	32	21	18	28	1.96
113930--114041	58	1.9	58	92	0	188	34	23	18	23	1.96
114676--114711	15	2.3	15	90	9	54	27	0	0	72	0.85
114622--114771	67	2.3	66	86	7	202	41	0	2	56	1.13
114626--114773	63	2.4	62	83	12	178	41	0	2	55	1.14

Tables:   1

The End!