Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003345.1 Kokia drynarioides strain JFW-HI SEQ_116054, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2718
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.31


Found at i:1173 original size:23 final size:23

Alignment explanation


    Indices: 1142--1214  Score: 92
    Period size: 23  Copynumber: 3.2  Consensus size: 23

       1132 CATAAATACA

                     *             
       1142 CATAAATCATAGTAATATTTAAG
          1 CATAAATCACAGTAATATTTAAG

            *          *           
       1165 TATAAATCACATTAATATTTAAG
          1 CATAAATCACAGTAATATTTAAG

                       *   **      
       1188 CATAAATCACATTAACCTTTAAG
          1 CATAAATCACAGTAATATTTAAG

                
       1211 CATA
          1 CATA

       1215 TAACGCATGA


Statistics
Matches: 44,  Mismatches: 6, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  23   44  1.00

ACGTcount: A:0.47, C:0.14, G:0.05, T:0.34


Consensus pattern (23 bp):   
CATAAATCACAGTAATATTTAAG
Done.