Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003349.1 Kokia drynarioides strain JFW-HI SEQ_116063, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2665
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.37


Found at i:1125 original size:62 final size:65

Alignment explanation


    Indices: 1050--1191  Score: 182
    Period size: 71  Copynumber: 2.1  Consensus size: 65

       1040 ATTCGTGGAG

                                      **                                     
       1050 TTTTTGGACCAACAG-T-C-CAAATATTTAAAGGTATAAAGCCAGTGAAGATACAAATGAAGTAT
          1 TTTTTGGACCAACAGCTACGCAAATAACTAAAGGTATAAAGCCAGTGAAGATACAAATGAAGTAT

                    *                                                        
       1112 TTTTTGGATCAACAGTCCTGACAGTGCAAATAACTAAAGGTATAAAGCCAGTGAAGATACAAATG
          1 TTTTTGGACCAACAG--CT-AC---GCAAATAACTAAAGGTATAAAGCCAGTGAAGATACAAATG

                  
       1177 AAGTAT
         60 AAGTAT

                     
       1183 TTTTTGGAC
          1 TTTTTGGAC

       1192 TAGCGGTCTT


Statistics
Matches: 67,  Mismatches: 4, Indels: 9
        0.84            0.05        0.11

Matches are distributed among these distances:
  62   14  0.21
  65    1  0.01
  67    1  0.01
  71   51  0.76

ACGTcount: A:0.39, C:0.13, G:0.19, T:0.28


Consensus pattern (65 bp):   
TTTTTGGACCAACAGCTACGCAAATAACTAAAGGTATAAAGCCAGTGAAGATACAAATGAAGTAT

Found at i:1304 original size:61 final size:61

Alignment explanation


    Indices: 1209--1331  Score: 246
    Period size: 61  Copynumber: 2.0  Consensus size: 61

       1199 CTTGACATTG

                                                                         
       1209 ATTATAAAAAAATATAATATTCTTTTGTGATGGGTGCAATAACCTTTAGATATATTATTAA
          1 ATTATAAAAAAATATAATATTCTTTTGTGATGGGTGCAATAACCTTTAGATATATTATTAA

                                                                         
       1270 ATTATAAAAAAATATAATATTCTTTTGTGATGGGTGCAATAACCTTTAGATATATTATTAA
          1 ATTATAAAAAAATATAATATTCTTTTGTGATGGGTGCAATAACCTTTAGATATATTATTAA

             
       1331 A
          1 A

       1332 CTGGCAGTTC


Statistics
Matches: 62,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  61   62  1.00

ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41


Consensus pattern (61 bp):   
ATTATAAAAAAATATAATATTCTTTTGTGATGGGTGCAATAACCTTTAGATATATTATTAA
Done.