Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003356.1 Kokia drynarioides strain JFW-HI SEQ_116075, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1078
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32


Found at i:53 original size:6 final size:6

Alignment explanation


    Indices: 44--104  Score: 72
    Period size: 6  Copynumber: 10.2  Consensus size: 6

         34 GATGAGCGTA

                                       *                            *
         44 AAGGTG AAGGTG -AGGATG AAGGTA AAGGTG AAGGTG -AGGATG AAGGTA
          1 AAGGTG AAGGTG AAGG-TG AAGGTG AAGGTG AAGGTG AAGG-TG AAGGTG

                           
         92 AAGGTG AAGGTG A
          1 AAGGTG AAGGTG A

        105 GGATTCGAAA


Statistics
Matches: 47,  Mismatches: 4, Indels: 8
        0.80            0.07        0.14

Matches are distributed among these distances:
   5    6  0.13
   6   35  0.74
   7    6  0.13

ACGTcount: A:0.38, C:0.00, G:0.46, T:0.16


Consensus pattern (6 bp):   
AAGGTG

Found at i:60 original size:24 final size:24

Alignment explanation


    Indices: 28--108  Score: 146
    Period size: 24  Copynumber: 3.4  Consensus size: 24

         18 CAGAATGGGG

                                     
         28 GGTGAGGATG-AGCGTAAAGGTGAA
          1 GGTGAGGATGAAG-GTAAAGGTGAA

                                    
         52 GGTGAGGATGAAGGTAAAGGTGAA
          1 GGTGAGGATGAAGGTAAAGGTGAA

                                    
         76 GGTGAGGATGAAGGTAAAGGTGAA
          1 GGTGAGGATGAAGGTAAAGGTGAA

                     
        100 GGTGAGGAT
          1 GGTGAGGAT

        109 TCGAAAAAGG


Statistics
Matches: 56,  Mismatches: 0, Indels: 2
        0.97            0.00        0.03

Matches are distributed among these distances:
  24   54  0.96
  25    2  0.04

ACGTcount: A:0.35, C:0.01, G:0.47, T:0.17


Consensus pattern (24 bp):   
GGTGAGGATGAAGGTAAAGGTGAA

Done.