Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003358.1 Kokia drynarioides strain JFW-HI SEQ_116079, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4407
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37


Found at i:975 original size:24 final size:23

Alignment explanation


    Indices: 957--1001  Score: 65
    Period size: 24  Copynumber: 1.9  Consensus size: 23

        947 CAATTTAACT

                                     
        957 AAATA-AATTATTAAAAATTCATAA
          1 AAATAGAA-TATTAAAAATT-ATAA

                                 
        981 AAATAGAATATTAAAAATTAT
          1 AAATAGAATATTAAAAATTAT

       1002 TTAAATTAAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  23    2  0.10
  24   16  0.80
  25    2  0.10

ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33


Consensus pattern (23 bp):   
AAATAGAATATTAAAAATTATAA

Found at i:1870 original size:31 final size:33

Alignment explanation


    Indices: 1806--1878  Score: 98
    Period size: 31  Copynumber: 2.3  Consensus size: 33

       1796 ATATATATAT

                                 *      *    
       1806 ATAATTTTATAATTATTATTTTAAAAAATTTTA
          1 ATAATTTTATAATTATTATTTAAAAAAAATTTA

                                              
       1839 ATAATTTTAT-ATT-TT-TTTAAAAAAAAATTTA
          1 ATAATTTTATAATTATTATTT-AAAAAAAATTTA

                     
       1870 ATAATTTTA
          1 ATAATTTTA

       1879 AAATCATTTG


Statistics
Matches: 37,  Mismatches: 2, Indels: 4
        0.86            0.05        0.09

Matches are distributed among these distances:
  30    3  0.08
  31   21  0.57
  32    3  0.08
  33   10  0.27

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (33 bp):   
ATAATTTTATAATTATTATTTAAAAAAAATTTA
Done.