Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000336.1 Kokia drynarioides strain JFW-HI SEQ_111107, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2193
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35


Found at i:2164 original size:3 final size:3

Alignment explanation


    Indices: 2156--2193  Score: 76
    Period size: 3  Copynumber: 12.7  Consensus size: 3

       2146 ATTTAAAGCC

                                                              
       2156 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   35  1.00

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32


Consensus pattern (3 bp):   
AAT

Done.