Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003369.1 Kokia drynarioides strain JFW-HI SEQ_116092, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11790
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.32


Found at i:10313 original size:42 final size:43

Alignment explanation


    Indices: 10252--10337  Score: 165
    Period size: 42  Copynumber: 2.0  Consensus size: 43

      10242 ACGAAGTACA

                                                       
      10252 TAGTCTTTAAAAAAAACACAAATCATGAGCAACTAATGCAACT
          1 TAGTCTTTAAAAAAAACACAAATCATGAGCAACTAATGCAACT

                                                       
      10295 TAGTC-TTAAAAAAAACACAAATCATGAGCAACTAATGCAACT
          1 TAGTCTTTAAAAAAAACACAAATCATGAGCAACTAATGCAACT

             
      10337 T
          1 T

      10338 CATGATCTGC


Statistics
Matches: 43,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  42   38  0.88
  43    5  0.12

ACGTcount: A:0.49, C:0.19, G:0.09, T:0.23


Consensus pattern (43 bp):   
TAGTCTTTAAAAAAAACACAAATCATGAGCAACTAATGCAACT
Done.