Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000337.1 Kokia drynarioides strain JFW-HI SEQ_111109, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 617

Length: 1029
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37


Found at i:519 original size:19 final size:19

Alignment explanation


    Indices: 497--533  Score: 56
    Period size: 19  Copynumber: 1.9  Consensus size: 19

        487 TTTAAAGTTG

                 *     *       
        497 ATTATGAAATATAAATATC
          1 ATTATAAAATAAAAATATC

                              
        516 ATTATAAAATAAAAATAT
          1 ATTATAAAATAAAAATAT

        534 TGTTTAATAT


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   16  1.00

ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35


Consensus pattern (19 bp):   
ATTATAAAATAAAAATATC

Found at i:776 original size:15 final size:15

Alignment explanation


    Indices: 756--787  Score: 64
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        746 ACAGCACAAA

                           
        756 GTTTTAATAATAAAT
          1 GTTTTAATAATAAAT

                           
        771 GTTTTAATAATAAAT
          1 GTTTTAATAATAAAT

              
        786 GT
          1 GT

        788 GATTAGCGTG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47


Consensus pattern (15 bp):   
GTTTTAATAATAAAT
Done.