Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003371.1 Kokia drynarioides strain JFW-HI SEQ_116099, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 643

Length: 1072
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:549 original size:51 final size:51

Alignment explanation


    Indices: 481--725  Score: 375
    Period size: 51  Copynumber: 4.8  Consensus size: 51

        471 GCTATAAACG

                        *               *                 *     
        481 AAAGAGTCCGATAACTAAGTGTCATCGTAAGTAAATGAATCCTTTATGGATT
          1 AAAG-GTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT

                      *                                  *     
        533 AAAGGTCCGACGACTAAGTGTCATCGTGAGTAAATGAATCCTTTATGGATT
          1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT

                                                    *          
        584 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCNTTTACGGATT
          1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT

                                                     * **  *   
        635 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAAT-CATGGCGAATT
          1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT

                                     *               
        685 AAAGGTCCGATGACTAAGTGTCATCCTGAGTAAATGAATCC
          1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCC

        726 ATGGCGAGAA


Statistics
Matches: 180,  Mismatches: 12, Indels: 3
        0.92            0.06        0.02

Matches are distributed among these distances:
  50   44  0.24
  51  132  0.73
  52    4  0.02

ACGTcount: A:0.33, C:0.15, G:0.23, T:0.28


Consensus pattern (51 bp):   
AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT

Done.