Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003380.1 Kokia drynarioides strain JFW-HI SEQ_116110, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 640

Length: 1067
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.33


Found at i:674 original size:59 final size:59

Alignment explanation


    Indices: 580--1040  Score: 582
    Period size: 59  Copynumber: 7.8  Consensus size: 59

        570 GTCCCTAAAC

                          * *                                      *   
        580 CTTCCAAAAATTACCAATTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCAAAT
          1 CTTCCAAAAATTACTATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCGAAT

                      *                   *          *       *     *   
        639 CTTCCAAAAAATACTATTTTACCCCCGAACATCCAAAAATCTCATTTTTGACCCCAAAT
          1 CTTCCAAAAATTACTATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCGAAT

                *                     *                     *          
        698 CTTCTAAAAATTACTATTTTACCCCCAAACTTCCAAAAATCCCATTTTCAACCCCGAAT
          1 CTTCCAAAAATTACTATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCGAAT

                                    * *                      * *      *
        757 CTTCCAAAAATTACTATTTTACCCTCAAACTTCCAAAAATCCCATTTTTGATCCCGAAC
          1 CTTCCAAAAATTACTATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCGAAT

                                     *                      *    *    *
        816 CTTCCAAAAATTACTATTTTACCCCTGAACTTCCAAAAATCCCATTTTAAACCTCGAAC
          1 CTTCCAAAAATTACTATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCGAAT

                **        *           *         *            *   **    
        875 CTTCTTAAAATTACCATTTTACCCCCAAACTTCCAACAATCCCATTTTTGACCTTGAAT
          1 CTTCCAAAAATTACTATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCGAAT

                                 *  *    *          *         *        
        934 CTTCCAAAAATTACTATTTT-TCCTCGAATTTCCAAAAATTCCATTTTTACCCCCGAAT
          1 CTTCCAAAAATTACTATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCGAAT

                          * *       *                 *      
        992 CTTCCAAAAATTACCACTTTACCCTCGAACTTCCAAAAATCCTATTTTT
          1 CTTCCAAAAATTACTATTTTACCCCCGAACTTCCAAAAATCCCATTTTT

       1041 GATTTCGAAC


Statistics
Matches: 345,  Mismatches: 56, Indels: 2
        0.86            0.14        0.00

Matches are distributed among these distances:
  58   46  0.13
  59  299  0.87

ACGTcount: A:0.34, C:0.31, G:0.03, T:0.32


Consensus pattern (59 bp):   
CTTCCAAAAATTACTATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCGAAT

Done.