Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003394.1 Kokia drynarioides strain JFW-HI SEQ_116133, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23000
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34


Found at i:45 original size:2 final size:2

Alignment explanation


    Indices: 38--70  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

         28 ATCATTGAGA

                                                             
         38 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

         71 ATTTTTATTA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.