Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003400.1 Kokia drynarioides strain JFW-HI SEQ_116142, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2789
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36


Found at i:422 original size:13 final size:12

Alignment explanation


    Indices: 400--429  Score: 51
    Period size: 13  Copynumber: 2.4  Consensus size: 12

        390 ATGCTCTATA

                        
        400 TTTTTCTTTTTC
          1 TTTTTCTTTTTC

                         
        412 TTTTTCATTTTTC
          1 TTTTTC-TTTTTC

                 
        425 TTTTT
          1 TTTTT

        430 TTTCTTGAGC


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12    6  0.35
  13   11  0.65

ACGTcount: A:0.03, C:0.13, G:0.00, T:0.83


Consensus pattern (12 bp):   
TTTTTCTTTTTC

Found at i:430 original size:7 final size:6

Alignment explanation


    Indices: 400--429  Score: 51
    Period size: 6  Copynumber: 4.8  Consensus size: 6

        390 ATGCTCTATA

                                              
        400 TTTTTC TTTTTC TTTTTC ATTTTTC TTTTT
          1 TTTTTC TTTTTC TTTTTC -TTTTTC TTTTT

        430 TTTCTTGAGC


Statistics
Matches: 23,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
   6   17  0.74
   7    6  0.26

ACGTcount: A:0.03, C:0.13, G:0.00, T:0.83


Consensus pattern (6 bp):   
TTTTTC
Done.