Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01003409.1 Kokia drynarioides strain JFW-HI SEQ_116160, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 807
Length: 1345
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Found at i:435 original size:178 final size:178
Alignment explanation
Indices: 136--490 Score: 656
Period size: 178 Copynumber: 2.0 Consensus size: 178
126 ATATCCAATT
*
136 ATCTAAGTCAAAGCAAAATCACACCCAACACGTTAGGGCACGATTTGTTTTTGAATCCCTTAAAA
1 ATCTAAGTCAAAGCAAAATCACACCCAACACATTAGGGCACGATTTGTTTTTGAATCCCTTAAAA
201 TAATGGAATATCAAGTAACTAATGATTTTAAATAGATTGCTTGATTATTTTAGGTTCAGGGAAAA
66 TAATGGAATATCAAGTAACTAATGATTTTAAATAGATTGCTTGATTATTTTAGGTTCAGGGAAAA
*
266 GTTGTACTCATCACGTTAAAGCACAATTCCTAGTATTCCTAAAATAAC
131 GTCGTACTCATCACGTTAAAGCACAATTCCTAGTATTCCTAAAATAAC
* *
314 ATCTAAGTCAAAGCAAAATCACACGCAACACATTAGGGCACGATTTGTTTTTTAATCCCTTAAAA
1 ATCTAAGTCAAAGCAAAATCACACCCAACACATTAGGGCACGATTTGTTTTTGAATCCCTTAAAA
*
379 TAATGGAATATCAAGTAACTAATGATTTTAAATAGATTGGTTGATTATTTTAGGTTCAGGGAAAA
66 TAATGGAATATCAAGTAACTAATGATTTTAAATAGATTGCTTGATTATTTTAGGTTCAGGGAAAA
*
444 GTCGTACTCATCACGTTAGAGCACAATTCCTAGTATTCCTAAAATAA
131 GTCGTACTCATCACGTTAAAGCACAATTCCTAGTATTCCTAAAATAA
491 TAGAGCGTTG
Statistics
Matches: 171, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
178 171 1.00
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (178 bp):
ATCTAAGTCAAAGCAAAATCACACCCAACACATTAGGGCACGATTTGTTTTTGAATCCCTTAAAA
TAATGGAATATCAAGTAACTAATGATTTTAAATAGATTGCTTGATTATTTTAGGTTCAGGGAAAA
GTCGTACTCATCACGTTAAAGCACAATTCCTAGTATTCCTAAAATAAC
Done.