genome.fa.s3416.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003416.1 Kokia drynarioides strain JFW-HI SEQ_116175, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89209

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
222--274	15	3.5	15	81	0	70	20	15	26	37	1.92
311--373	17	3.7	17	89	0	90	52	3	0	44	1.17
2142--2264	36	3.4	36	75	2	113	23	19	21	34	1.96
9586--9611	8	3.2	8	100	0	52	34	0	0	65	0.93
21856--22075	29	7.5	28	80	10	185	35	1	25	37	1.67
21856--22076	58	3.8	57	77	12	209	35	1	25	37	1.67
21897--22061	87	1.9	88	82	6	210	37	1	23	37	1.65
23620--23689	17	3.7	17	72	27	61	48	1	7	42	1.39
23668--23733	32	2.1	32	100	0	132	42	3	6	48	1.43
24228--24659	39	11.2	39	70	14	238	24	20	31	23	1.98
24325--24660	78	4.3	76	80	8	322	24	21	30	23	1.98
32702--32747	24	1.9	24	81	0	56	15	28	10	45	1.79
36860--36915	29	1.9	30	88	3	87	39	1	19	39	1.62
36860--36940	29	2.8	29	81	10	78	38	2	18	40	1.64
36871--37175	29	10.5	29	81	8	297	35	2	24	37	1.68
36927--37175	59	4.3	56	80	11	245	35	2	24	37	1.67
38678--38807	64	2.0	64	95	0	233	24	9	26	39	1.85
38812--38853	18	2.3	18	100	0	84	16	0	42	40	1.48
44254--44314	30	2.0	30	100	0	122	45	3	16	34	1.63
44448--44485	19	2.1	19	85	5	51	50	18	5	26	1.68
49614--49643	16	1.9	15	100	0	51	26	13	16	43	1.85
49631--49694	29	2.2	29	80	5	76	37	17	9	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51248--51295	23	2.1	23	88	3	71	50	25	8	16	1.73
53031--53473	192	2.3	193	83	5	547	25	27	20	26	1.99
53951--53982	16	2.0	16	93	0	55	25	18	3	53	1.59
54249--54321	36	2.1	35	92	7	123	56	0	23	20	1.43
59218--59247	2	15.0	2	100	0	60	50	0	0	50	1.00
64413--64481	33	2.1	33	100	0	138	28	14	8	47	1.74
64684--64815	57	2.3	57	84	5	169	29	4	9	56	1.50
64948--65067	59	2.1	58	82	4	145	50	6	16	25	1.69
79113--79149	18	2.1	18	90	5	58	32	10	24	32	1.90
81818--81890	31	2.4	31	95	2	130	26	9	15	49	1.74
83638--83676	20	1.9	21	84	5	53	17	5	7	69	1.32

Tables:   1

The End!