Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003418.1 Kokia drynarioides strain JFW-HI SEQ_116179, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1703
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35


Found at i:1610 original size:6 final size:6

Alignment explanation


    Indices: 1547--1594  Score: 62
    Period size: 6  Copynumber: 8.0  Consensus size: 6

       1537 AATTAGTACA

                                   *      *                         
       1547 TTTATT TTTATT TTTATT TTCATT TTCATT TTTAGTT TTT-TT TTTATT
          1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTA-TT TTTATT TTTATT

       1595 ATGTATTATT


Statistics
Matches: 38,  Mismatches: 2, Indels: 4
        0.86            0.05        0.09

Matches are distributed among these distances:
   5    5  0.13
   6   28  0.74
   7    5  0.13

ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79


Consensus pattern (6 bp):   
TTTATT
Done.