Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003419.1 Kokia drynarioides strain JFW-HI SEQ_116180, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5174
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33


Found at i:272 original size:17 final size:17

Alignment explanation


    Indices: 252--296  Score: 72
    Period size: 17  Copynumber: 2.6  Consensus size: 17

        242 CAAATCTATG

                             
        252 ATAAATTTAAATTTAAA
          1 ATAAATTTAAATTTAAA

                 *    *      
        269 ATAAACTTAATTTTAAA
          1 ATAAATTTAAATTTAAA

                       
        286 ATAAATTTAAA
          1 ATAAATTTAAA

        297 GTCTGTCGGG


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  17   24  1.00

ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40


Consensus pattern (17 bp):   
ATAAATTTAAATTTAAA
Done.