Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003423.1 Kokia drynarioides strain JFW-HI SEQ_116191, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2638
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.32


Found at i:1713 original size:52 final size:52

Alignment explanation


    Indices: 1616--1854  Score: 282
    Period size: 52  Copynumber: 4.6  Consensus size: 52

       1606 TTCCCATTTA

                             *    *  *     *     **          *   
       1616 ATACTCACGATGACACAAAGTCCTCGGACCTTA-AATGAGTAAAAGGATCCAT
          1 ATACTCACGATGACACATAGTCATCAGACCTCATAATCCGT-AAAGGATTCAT

              *      *  *                          *            
       1668 ATGCTCACGGTGGCACATAGTCATCAGACCTCATAATCCATAAAGGATTCAT
          1 ATACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAAGGATTCAT

             *             **                                   
       1720 AAACTCACGATGACATGTAGTCATCAGACCTCATAATCCGTAAAGGATTCAT
          1 ATACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAAGGATTCAT

                    * *              *           *              
       1772 ATACTCACAAAGACACATAGTCATCGGACCTCATAATACGTAAAGGATTCAT
          1 ATACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAAGGATTCAT

                   *                 *     
       1824 ATACTCATGATGACACATAGTCATCGGACCT
          1 ATACTCACGATGACACATAGTCATCAGACCT

       1855 TTTTGCATTT


Statistics
Matches: 158,  Mismatches: 28, Indels: 2
        0.84            0.15        0.01

Matches are distributed among these distances:
  52  154  0.97
  53    4  0.03

ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24


Consensus pattern (52 bp):   
ATACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAAGGATTCAT
Done.