Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003426.1 Kokia drynarioides strain JFW-HI SEQ_116197, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2232
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37


Found at i:955 original size:18 final size:18

Alignment explanation


    Indices: 924--974  Score: 57
    Period size: 18  Copynumber: 2.7  Consensus size: 18

        914 GTAAAAATTC

                                
        924 AAAAAATATATAAAAAAAAT
          1 AAAAAAT-T-TAAAAAAAAT

            *              ** 
        944 CAAAAATTTAAAAAATCT
          1 AAAAAATTTAAAAAAAAT

                         
        962 AAAAAATTTAAAA
          1 AAAAAATTTAAAA

        975 TATCTTATAA


Statistics
Matches: 27,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  18   20  0.74
  19    1  0.04
  20    6  0.22

ACGTcount: A:0.73, C:0.04, G:0.00, T:0.24


Consensus pattern (18 bp):   
AAAAAATTTAAAAAAAAT

Found at i:979 original size:18 final size:18

Alignment explanation


    Indices: 937--979  Score: 63
    Period size: 18  Copynumber: 2.5  Consensus size: 18

        927 AAATATATAA

                              
        937 AAAAAATC--AAAAATTT
          1 AAAAAATCTAAAAAATTT

                              
        953 AAAAAATCTAAAAAATTT
          1 AAAAAATCTAAAAAATTT

                *    
        971 AAAATATCT
          1 AAAAAATCT

        980 TATAATTTAC


Statistics
Matches: 24,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  16    8  0.33
  18   16  0.67

ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28


Consensus pattern (18 bp):   
AAAAAATCTAAAAAATTT
Done.