Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003427.1 Kokia drynarioides strain JFW-HI SEQ_116198, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 741

Length: 1235
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33


Found at i:1134 original size:18 final size:18

Alignment explanation


    Indices: 1113--1162  Score: 59
    Period size: 16  Copynumber: 2.8  Consensus size: 18

       1103 AAAACCGACG

                              
       1113 AACAAGTCAAAACCCAAA
          1 AACAAGTCAAAACCCAAA

                        *     
       1131 AACAAG-C-AAATCCAAA
          1 AACAAGTCAAAACCCAAA

                            
       1147 AACATAGTCTAAAACC
          1 AACA-AGTC-AAAACC

       1163 AAATGTTCGA


Statistics
Matches: 26,  Mismatches: 2, Indels: 6
        0.76            0.06        0.18

Matches are distributed among these distances:
  16   12  0.46
  17    3  0.12
  18    7  0.27
  20    4  0.15

ACGTcount: A:0.58, C:0.26, G:0.06, T:0.10


Consensus pattern (18 bp):   
AACAAGTCAAAACCCAAA

Found at i:1148 original size:17 final size:18

Alignment explanation


    Indices: 1113--1165  Score: 56
    Period size: 17  Copynumber: 2.9  Consensus size: 18

       1103 AAAACCGACG

                          *   
       1113 AACAAGTCAAAACCCAAA
          1 AACAAGTCAAAACCAAAA

                       *      
       1131 AACAAG-CAAATCC-AAA
          1 AACAAGTCAAAACCAAAA

                               
       1147 AACATAGTCTAAAACCAAA
          1 AACA-AGTC-AAAACCAAA

       1166 TGTTCGAAAA


Statistics
Matches: 29,  Mismatches: 2, Indels: 6
        0.78            0.05        0.16

Matches are distributed among these distances:
  16    7  0.24
  17    8  0.28
  18    7  0.24
  19    5  0.17
  20    2  0.07

ACGTcount: A:0.60, C:0.25, G:0.06, T:0.09


Consensus pattern (18 bp):   
AACAAGTCAAAACCAAAA
Done.