Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003435.1 Kokia drynarioides strain JFW-HI SEQ_116212, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1153
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.34


Found at i:1028 original size:23 final size:22

Alignment explanation


    Indices: 998--1145  Score: 131
    Period size: 23  Copynumber: 6.5  Consensus size: 22

        988 ACGCTAGCGC

                                    
        998 GCTTACTGTTTCGCACT-TCGTGT
          1 GCTTACTGTTT-GCACTAT-GTGT

                                    
       1021 GCTTACTGTTTTGCACT-TCGTGT
          1 GCTTACTG-TTTGCACTAT-GTGT

                   *                
       1044 GCTTACTATTTCGCACT-TCGTGT
          1 GCTTACTGTTT-GCACTAT-GTGT

              *           *       *
       1067 GCCTACTGATTTGCGCTATGTGC
          1 GCTTACTG-TTTGCACTATGTGT

              *     *       *     
       1090 GCCTACTGATTGCACTGTGTGT
          1 GCTTACTGTTTGCACTATGTGT

                     *             
       1112 GCTTACTGGATTGCACTATGTGT
          1 GCTTACT-GTTTGCACTATGTGT

                       
       1135 GCTTACTGTTT
          1 GCTTACTGTTT

       1146 CCCCAGCA


Statistics
Matches: 108,  Mismatches: 12, Indels: 11
        0.82            0.09        0.08

Matches are distributed among these distances:
  22   22  0.20
  23   79  0.73
  24    7  0.06

ACGTcount: A:0.12, C:0.23, G:0.23, T:0.42


Consensus pattern (22 bp):   
GCTTACTGTTTGCACTATGTGT

Found at i:1065 original size:46 final size:46

Alignment explanation


    Indices: 998--1146  Score: 164
    Period size: 46  Copynumber: 3.3  Consensus size: 46

        988 ACGCTAGCGC

                   *                       *               
        998 GCTTACTGTTTCGCACTTCGTGTGCTTACTGTTTTGCACT-TCGTGT
          1 GCTTACTATTTCGCACTTCGTGTGCTTACTGATTTGCACTAT-GTGT

                                     *           *       *
       1044 GCTTACTATTTCGCACTTCGTGTGCCTACTGATTTGCGCTATGTGC
          1 GCTTACTATTTCGCACTTCGTGTGCTTACTGATTTGCACTATGTGT

              *                                              
       1090 GCCTACTGA-TT-GCACTGT-GTGTGCTTACTGGA-TTGCACTATGTGT
          1 GCTTACT-ATTTCGCACT-TCGTGTGCTTACT-GATTTGCACTATGTGT

                   *    
       1135 GCTTACTGTTTC
          1 GCTTACTATTTC

       1147 CCCAGCA


Statistics
Matches: 86,  Mismatches: 11, Indels: 12
        0.79            0.10        0.11

Matches are distributed among these distances:
  45   34  0.40
  46   50  0.58
  47    2  0.02

ACGTcount: A:0.12, C:0.23, G:0.23, T:0.42


Consensus pattern (46 bp):   
GCTTACTATTTCGCACTTCGTGTGCTTACTGATTTGCACTATGTGT
Done.