Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003436.1 Kokia drynarioides strain JFW-HI SEQ_116213, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2468
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.36


Found at i:1400 original size:17 final size:17

Alignment explanation


    Indices: 1374--1406  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       1364 TTAAGATTAG

                 *           
       1374 AATTTCAAAATTAAAAA
          1 AATTTAAAAATTAAAAA

                            
       1391 AATTTAAAAATTAAAA
          1 AATTTAAAAATTAAAA

       1407 TTGACTAATT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30


Consensus pattern (17 bp):   
AATTTAAAAATTAAAAA

Found at i:1421 original size:22 final size:21

Alignment explanation


    Indices: 1391--1435  Score: 54
    Period size: 22  Copynumber: 2.1  Consensus size: 21

       1381 AAATTAAAAA

                *     *           
       1391 AATTTAAAAATTAAAATTGACT
          1 AATTCAAAAAATAAAA-TGACT

                         *       
       1413 AATTCAAAAAATACAATGACT
          1 AATTCAAAAAATAAAATGACT

              
       1434 AA
          1 AA

       1436 AAGTAATTAA


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  21    7  0.35
  22   13  0.65

ACGTcount: A:0.58, C:0.09, G:0.04, T:0.29


Consensus pattern (21 bp):   
AATTCAAAAAATAAAATGACT
Done.