Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003437.1 Kokia drynarioides strain JFW-HI SEQ_116215, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12581
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.36


Found at i:8997 original size:61 final size:60

Alignment explanation


    Indices: 8885--9025  Score: 160
    Period size: 61  Copynumber: 2.3  Consensus size: 60

       8875 GTTTTAACTA

                        *         *    **                 *              
       8885 TAAAATATTCAACAAATTTAGCTCTCAGTGTTTACAAAATTCATCATTTTAGTTCGAATTC
          1 TAAAATATTCAATAAATTTAGCCCTCAAAGTTTACAAAATTCATCAATTTAGTTCGAA-TC

                                              *   *   *             *    
       8946 TAAAATATTCAATAAATTTAGCCCTCAAAAG-TTGCAAGATTTATCAATTTAGTTCTAATC
          1 TAAAATATTCAATAAATTTAGCCCTC-AAAGTTTACAAAATTCATCAATTTAGTTCGAATC

                                 
       9006 TAAAA-ATTCAATAAAATTTA
          1 TAAAATATTCAAT-AAATTTA

       9026 TCAATTTGCT


Statistics
Matches: 69,  Mismatches: 9, Indels: 5
        0.83            0.11        0.06

Matches are distributed among these distances:
  59    7  0.10
  60   14  0.20
  61   46  0.67
  62    2  0.03

ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38


Consensus pattern (60 bp):   
TAAAATATTCAATAAATTTAGCCCTCAAAGTTTACAAAATTCATCAATTTAGTTCGAATC
Done.