Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003441.1 Kokia drynarioides strain JFW-HI SEQ_116226, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2075
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33


Found at i:672 original size:72 final size:69

Alignment explanation


    Indices: 549--775  Score: 247
    Period size: 72  Copynumber: 3.2  Consensus size: 69

        539 AGACATATTT

                              **                   *     *                   
        549 GCAATATGAGTCAGCTTCTCTATTTCATTGCATCTTATAGCAATTGGAGTGGTCCAATTCCAAAT
          1 GCAATATGAGTCAGCTT-AGTATTTCA-TGCATCTTATAACAATTTGAGTGGTCCAATTCCAAAT

                  *
        614 TGCTTAT
         64 TGCTT-G

                                         *          *     *               *  
        621 GCAATATGAGTCAGCTTAAGTATTTCGATACATCTTATAATAATTTAAGTGGTCCAATTCCACAT
          1 GCAATATGAGTCAGCTT-AGTATTTC-ATGCATCTTATAACAATTTGAGTGGTCCAATTCCAAAT

                  
        686 TGCTTG
         64 TGCTTG

                          *   * *                                         *  
        692 GACAATATGAGTCAACTTCGCACTTTCAATGCATCTTATAACAATTTGAGTGGTCCAATTCCTAA
          1 G-CAATATGAGTCAGCTTAGTA-TTTC-ATGCATCTTATAACAATTTGAGTGGTCCAATTCCAAA

               *    
        757 TTGTTTGG
         63 TTGCTT-G

                       
        765 GCAATATGAGT
          1 GCAATATGAGT

        776 GCTCTGAATT


Statistics
Matches: 131,  Mismatches: 20, Indels: 8
        0.82            0.13        0.05

Matches are distributed among these distances:
  71    3  0.02
  72  125  0.95
  73    3  0.02

ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36


Consensus pattern (69 bp):   
GCAATATGAGTCAGCTTAGTATTTCATGCATCTTATAACAATTTGAGTGGTCCAATTCCAAATTG
CTTG
Done.