genome.fa.s3449.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003449.1 Kokia drynarioides strain JFW-HI SEQ_116239, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  177189

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4478--4519	22	1.9	22	90	0	66	4	21	0	73	1.01
11724--11832	52	2.1	51	88	6	157	43	6	1	48	1.39
20090--20125	18	2.0	18	94	0	63	41	0	19	38	1.52
21415--21550	52	2.6	52	83	4	168	27	11	22	38	1.89
22406--22625	117	1.9	116	87	2	325	25	14	20	40	1.90
27422--27659	52	4.6	52	92	0	341	36	25	13	24	1.92
29722--29791	33	2.1	33	94	0	122	32	32	14	20	1.92
33961--34003	21	2.0	21	86	8	61	39	23	9	27	1.85
34750--34982	52	4.5	52	86	0	304	35	24	14	25	1.94
37938--37993	25	2.2	25	84	6	69	69	3	1	25	1.14
40569--40731	52	3.1	52	90	1	256	26	15	22	34	1.94
44290--44428	52	2.7	52	88	0	197	29	13	21	35	1.92
44290--44468	52	3.4	52	83	4	175	29	15	20	34	1.94
45165--45221	21	2.7	21	86	0	78	28	15	26	29	1.96
52363--52452	20	4.5	20	76	5	65	11	31	17	40	1.85
53997--54053	23	2.6	22	81	8	71	57	5	1	35	1.31
54350--54432	42	2.0	42	100	0	166	33	24	19	22	1.97
55319--55414	51	1.9	51	82	6	124	35	16	11	36	1.85
55388--55438	24	2.1	24	85	0	66	39	11	13	35	1.82
56634--56698	31	2.1	31	82	5	78	52	12	10	24	1.71
56825--56876	23	2.3	23	86	6	70	50	0	0	50	1.00
60406--60440	6	5.8	6	90	9	54	17	0	0	82	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60406--60440	13	2.9	12	91	8	54	17	0	0	82	0.66
70673--70716	20	2.2	20	87	0	61	27	13	36	22	1.92
71033--71104	34	2.2	33	87	2	99	40	2	1	55	1.23
71058--71111	24	2.3	23	79	14	58	38	0	0	61	0.96
71104--71171	34	2.0	35	85	2	93	41	7	1	50	1.39
71098--71174	34	2.3	33	82	6	91	42	6	1	49	1.36
71562--71632	34	2.1	34	92	2	117	39	2	2	54	1.29
71574--71646	33	2.2	34	85	2	94	42	2	1	53	1.23
71034--72083	539	2.0	528	89	3	1622	31	20	8	40	1.81
77205--77261	27	2.2	26	78	9	62	31	1	1	64	1.13
79008--79057	21	2.4	21	86	0	64	36	18	16	30	1.92
79748--80042	53	5.6	53	89	0	403	35	21	14	28	1.93
82238--82278	7	5.7	7	82	5	55	48	24	0	26	1.51
82238--82277	15	2.7	15	84	3	55	50	22	0	27	1.50
82296--82329	7	5.0	7	96	3	61	58	29	0	11	1.33
83212--83292	38	2.1	38	86	4	110	43	11	9	35	1.74
85030--85068	16	2.2	18	86	13	55	76	7	0	15	0.99
85244--85306	32	2.0	32	90	0	99	63	12	0	23	1.29
85620--85830	62	3.5	59	78	7	210	30	18	15	35	1.93
86179--86332	62	2.5	62	80	6	177	42	10	15	31	1.81
88449--88941	250	2.0	249	91	3	794	44	10	13	30	1.78
90368--90393	11	2.4	11	100	0	52	15	30	11	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97501--97531	2	15.5	2	100	0	62	51	0	0	48	1.00
100053--100094	21	2.0	22	85	4	59	11	19	4	64	1.44
108851--108907	24	2.4	24	93	0	105	50	7	15	26	1.69
110838--111171	52	6.6	52	84	5	391	30	16	22	30	1.96
117906--118195	52	5.5	51	85	5	359	29	16	24	29	1.97
118148--118262	60	1.9	61	85	1	160	30	14	22	32	1.94
119627--119685	24	2.4	24	80	8	66	54	6	11	27	1.62
123740--123795	20	2.8	19	82	12	60	8	5	12	73	1.24
123789--123838	23	2.3	21	82	6	55	4	8	20	68	1.32
123829--123885	23	2.5	23	85	5	71	7	3	19	70	1.26
136152--136206	21	2.6	21	82	0	74	30	14	25	29	1.95
148417--148450	16	2.2	16	90	10	54	38	0	0	61	0.96
148501--148551	24	2.1	24	100	0	102	33	19	3	43	1.70
149861--149910	24	2.1	24	85	7	66	66	6	0	28	1.15
150355--150404	27	1.9	25	84	8	64	38	4	4	54	1.38
151430--151466	17	2.2	17	100	0	74	32	0	10	56	1.34
153829--153898	27	2.6	27	100	0	140	15	37	14	32	1.88
154162--154194	14	2.4	14	85	14	50	27	3	24	45	1.68
154162--154201	21	1.9	21	85	10	55	25	5	25	45	1.73
154319--154372	16	3.5	15	77	7	54	46	27	0	25	1.53
154366--154465	52	1.9	52	87	4	148	47	23	1	29	1.58
155015--155073	26	2.3	26	90	0	91	57	8	0	33	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155241--155290	26	1.9	26	83	0	64	58	6	0	36	1.23
158139--158201	26	2.4	26	94	0	108	23	19	4	52	1.65
175423--175451	14	2.0	15	93	6	51	10	6	0	82	0.83

Tables:   1

The End!