Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003457.1 Kokia drynarioides strain JFW-HI SEQ_116254, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3589
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.34


Found at i:2581 original size:30 final size:32

Alignment explanation


    Indices: 2545--2611  Score: 84
    Period size: 30  Copynumber: 2.2  Consensus size: 32

       2535 AATAATTTAT

                                *      *    
       2545 ATTTTTATAAATTTTAAAA-GATTAAATTA-A
          1 ATTTTTATAAATTTTAAAATAATTAAAATATA

                    * *                     
       2575 ATTTTTATTATTTTTAAAATAATTAAAATATA
          1 ATTTTTATAAATTTTAAAATAATTAAAATATA

                 
       2607 ATTTT
          1 ATTTT

       2612 ATCACTACTA


Statistics
Matches: 31,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
  30   17  0.55
  31    8  0.26
  32    6  0.19

ACGTcount: A:0.46, C:0.00, G:0.01, T:0.52


Consensus pattern (32 bp):   
ATTTTTATAAATTTTAAAATAATTAAAATATA

Done.