Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003459.1 Kokia drynarioides strain JFW-HI SEQ_116257, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 673

Length: 1122
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.36

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:465 original size:261 final size:251

Alignment explanation


    Indices: 1--481  Score: 872
    Period size: 261  Copynumber: 1.9  Consensus size: 251

                                                                             
          1 GGATTTGTTCGTATCGAGCATGAGTTTGATTTGATCTTCTTCTCAGTATCTCATCAGGAAGATGA
          1 GGATTTGTTCGTATCGAGCATGAGTTTGATTTGATCTTCTTCTCAGTATCTCATCAGGAAGATGA

                                                                             
         66 CCGCGTCGTTTGTTTTAATTCGCTTCTCTGTATGTCATCAGAAAGACGAATTTGGTTCACTTCTT
         66 CCGCGTCGTTTGTTTTAATTCGCTTCTCTGTATGTCATCAGAAAGACGAATTTGGTTCACTTCTT

                                                                             
        131 CGTATCTTATCATGAAGCTAACCTTTTATGACTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGC
        131 CGTATCTTATCATGAAGCTAACCTTTTATGACTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGC

                                                                             
        196 TGGGGTTCGAGGATTTGTTCGTATCNNNNNNNNNNCTCAGTGTCTCATCAGGAAGCTGGGGTTCG
        196 TGGGGTTCGAGGATTTGTTCGTATC----------CTCAGTGTCTCATCAGGAAGCTGGGGTTCG

             
        261 A
        251 A

                                                                             
        262 GGATTTGTTCGTATCGAGCATGAGTTTGATTTGATCTTCTTCTCAGTATCTCATCAGGAAGATGA
          1 GGATTTGTTCGTATCGAGCATGAGTTTGATTTGATCTTCTTCTCAGTATCTCATCAGGAAGATGA

                                                                             
        327 CCGCGTCGTTTGTTTTAATTCGCTTCTCTGTATGTCATCAGAAAGACGAATTTGGTTCACTTCTT
         66 CCGCGTCGTTTGTTTTAATTCGCTTCTCTGTATGTCATCAGAAAGACGAATTTGGTTCACTTCTT

                                                                             
        392 CGTATCTTATCATGAAGCTAACCTTTTATGACTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGC
        131 CGTATCTTATCATGAAGCTAACCTTTTATGACTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGC

                                     
        457 TGGGGTTCGAGGATTTGTTCGTATC
        196 TGGGGTTCGAGGATTTGTTCGTATC

        482 TAGCGTGAAT


Statistics
Matches: 220,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 261  220  1.00

ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37


Consensus pattern (251 bp):   
GGATTTGTTCGTATCGAGCATGAGTTTGATTTGATCTTCTTCTCAGTATCTCATCAGGAAGATGA
CCGCGTCGTTTGTTTTAATTCGCTTCTCTGTATGTCATCAGAAAGACGAATTTGGTTCACTTCTT
CGTATCTTATCATGAAGCTAACCTTTTATGACTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGC
TGGGGTTCGAGGATTTGTTCGTATCCTCAGTGTCTCATCAGGAAGCTGGGGTTCGA
Done.