Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003464.1 Kokia drynarioides strain JFW-HI SEQ_116263, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 665

Length: 1109
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.24


Found at i:747 original size:12 final size:12

Alignment explanation


    Indices: 720--767  Score: 53
    Period size: 12  Copynumber: 3.9  Consensus size: 12

        710 TGTGGGTATT

                         
        720 GAAGAAGTAAAA-
          1 GAAGAAG-AAAAG

                    *   
        732 GAAGAAGAGAAG
          1 GAAGAAGAAAAG

                *       
        744 GAAGTAGAAAAG
          1 GAAGAAGAAAAG

                        
        756 GAAGAAGGAAAA
          1 GAAGAA-GAAAA

        768 AAAGAGGAAA


Statistics
Matches: 30,  Mismatches: 4, Indels: 3
        0.81            0.11        0.08

Matches are distributed among these distances:
  11    3  0.10
  12   22  0.73
  13    5  0.17

ACGTcount: A:0.62, C:0.00, G:0.33, T:0.04


Consensus pattern (12 bp):   
GAAGAAGAAAAG

Found at i:747 original size:21 final size:19

Alignment explanation


    Indices: 723--765  Score: 50
    Period size: 19  Copynumber: 2.2  Consensus size: 19

        713 GGGTATTGAA

                                 
        723 GAAGTAAAAGAAGAAGAGAAG
          1 GAAGTAAAA-AAGAA-AGAAG

                  *     *      
        744 GAAGTAGAAAAGGAAGAAG
          1 GAAGTAAAAAAGAAAGAAG

               
        763 GAA
          1 GAA

        766 AAAAAGAGGA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  19    8  0.40
  20    4  0.20
  21    8  0.40

ACGTcount: A:0.60, C:0.00, G:0.35, T:0.05


Consensus pattern (19 bp):   
GAAGTAAAAAAGAAAGAAG
Done.