Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003469.1 Kokia drynarioides strain JFW-HI SEQ_116269, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1685
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.34


Found at i:183 original size:36 final size:36

Alignment explanation


    Indices: 136--210  Score: 132
    Period size: 36  Copynumber: 2.1  Consensus size: 36

        126 AAGAGGATGT

                                                
        136 TGTTCATCCTAAGAGTCCTGGGTTCGAGCGCCTATG
          1 TGTTCATCCTAAGAGTCCTGGGTTCGAGCGCCTATG

                         *          *           
        172 TGTTCATCCTAAGGGTCCTGGGTTTGAGCGCCTATG
          1 TGTTCATCCTAAGAGTCCTGGGTTCGAGCGCCTATG

               
        208 TGT
          1 TGT

        211 GCAAGGTGTG


Statistics
Matches: 37,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  36   37  1.00

ACGTcount: A:0.15, C:0.23, G:0.29, T:0.33


Consensus pattern (36 bp):   
TGTTCATCCTAAGAGTCCTGGGTTCGAGCGCCTATG

Found at i:827 original size:17 final size:17

Alignment explanation


    Indices: 807--839  Score: 50
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        797 TTAAAAATTA

                              
        807 TAAA-AATATAAATTATT
          1 TAAATAATA-AAATTATT

                            
        824 TAAATAATAAAATTAT
          1 TAAATAATAAAATTAT

        840 ATTTTTATTA


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  17   11  0.73
  18    4  0.27

ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39


Consensus pattern (17 bp):   
TAAATAATAAAATTATT
Done.