genome.fa.s3473.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003473.1 Kokia drynarioides strain JFW-HI SEQ_116275, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45746

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5530--5572	14	2.8	17	74	25	51	44	0	0	55	0.99
6703--6735	16	1.9	18	88	11	52	75	0	3	21	0.93
10992--11077	38	2.2	40	85	6	113	50	8	1	40	1.40
12864--12903	21	1.9	21	89	0	62	40	0	0	60	0.97
12856--12903	12	4.3	12	72	17	50	41	0	0	58	0.98
15077--15109	2	16.5	2	100	0	66	48	0	0	51	1.00
16747--16890	70	2.1	70	93	2	245	37	25	10	27	1.88
19058--19495	29	14.9	30	73	15	180	36	25	4	34	1.75
19059--19193	59	2.3	59	81	6	150	38	24	2	34	1.71
19158--19301	57	2.5	58	80	4	157	33	23	6	36	1.80
19296--19531	59	4.0	59	79	9	257	36	27	5	30	1.79
19063--19528	88	5.3	87	79	7	358	36	25	4	33	1.76
19306--19543	29	8.2	29	80	7	250	37	27	5	29	1.78
25887--26456	49	11.7	49	69	10	344	38	18	25	18	1.93
25876--26513	98	6.5	98	86	1	742	38	18	24	18	1.93
25876--26488	293	2.1	294	84	2	811	38	18	25	18	1.93
26749--26897	78	1.9	78	87	0	217	26	32	15	25	1.95
26763--27101	39	8.7	39	71	11	176	24	30	19	25	1.98
26841--27139	78	3.8	76	75	13	261	24	30	20	25	1.99
26763--27006	117	2.1	117	84	3	321	23	30	19	26	1.98
26919--27123	39	5.3	39	71	10	177	25	30	17	25	1.97
28362--28705	29	11.7	30	74	11	216	36	26	3	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28349--28703	59	6.0	58	73	14	239	36	26	3	33	1.73
28476--28757	59	4.8	58	77	9	234	35	26	5	32	1.80
28388--28706	88	3.6	86	82	5	338	36	26	3	32	1.75
28388--28763	88	4.3	86	81	6	337	35	27	5	32	1.79
28506--28776	29	9.3	29	70	15	141	35	28	5	30	1.81
29750--29785	18	2.0	18	88	0	54	25	5	8	61	1.46
39067--39133	30	2.2	30	79	10	73	43	13	13	29	1.82
40718--40792	38	2.0	38	91	0	123	24	10	25	40	1.87
41389--41456	35	1.9	35	93	0	118	23	16	13	47	1.81
43372--43440	35	2.0	35	97	0	129	26	15	13	44	1.83
43492--43679	71	2.6	71	79	5	191	21	13	27	37	1.91
43576--43773	71	2.8	71	79	10	174	20	17	26	35	1.95

Tables:   1

The End!