Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003474.1 Kokia drynarioides strain JFW-HI SEQ_116280, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 24713
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:853 original size:42 final size:42

Alignment explanation


    Indices: 794--877  Score: 168
    Period size: 42  Copynumber: 2.0  Consensus size: 42

        784 TCTTTTTCCA

                                                      
        794 CAATGAATGTTCTCCAATGCTCCTAAGAATAAGATAAAATAT
          1 CAATGAATGTTCTCCAATGCTCCTAAGAATAAGATAAAATAT

                                                      
        836 CAATGAATGTTCTCCAATGCTCCTAAGAATAAGATAAAATAT
          1 CAATGAATGTTCTCCAATGCTCCTAAGAATAAGATAAAATAT

        878 TGAACATCAT


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  42   42  1.00

ACGTcount: A:0.43, C:0.17, G:0.12, T:0.29


Consensus pattern (42 bp):   
CAATGAATGTTCTCCAATGCTCCTAAGAATAAGATAAAATAT

Found at i:13822 original size:31 final size:31

Alignment explanation


    Indices: 13770--13828  Score: 91
    Period size: 31  Copynumber: 1.9  Consensus size: 31

      13760 TAAAAAAAAC

                           **              
      13770 TTAAATAAAAACTTTTGAATAACTCAATGAT
          1 TTAAATAAAAACTTTCAAATAACTCAATGAT

                                  *     
      13801 TTAAATAAAAACTTTCAAATAATTCAAT
          1 TTAAATAAAAACTTTCAAATAACTCAAT

      13829 AACTATTAAA


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  31   25  1.00

ACGTcount: A:0.51, C:0.10, G:0.03, T:0.36


Consensus pattern (31 bp):   
TTAAATAAAAACTTTCAAATAACTCAATGAT
Done.