Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003480.1 Kokia drynarioides strain JFW-HI SEQ_116289, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5016
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32


Found at i:795 original size:35 final size:35

Alignment explanation


    Indices: 756--859  Score: 208
    Period size: 35  Copynumber: 3.0  Consensus size: 35

        746 TAATAGTGAA

                                               
        756 GTCAGTAAACAATTTGGAAACAGTGCTGACTTCTT
          1 GTCAGTAAACAATTTGGAAACAGTGCTGACTTCTT

                                               
        791 GTCAGTAAACAATTTGGAAACAGTGCTGACTTCTT
          1 GTCAGTAAACAATTTGGAAACAGTGCTGACTTCTT

                                              
        826 GTCAGTAAACAATTTGGAAACAGTGCTGACTTCT
          1 GTCAGTAAACAATTTGGAAACAGTGCTGACTTCT

        860 ACCGAAACTT


Statistics
Matches: 69,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   69  1.00

ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31


Consensus pattern (35 bp):   
GTCAGTAAACAATTTGGAAACAGTGCTGACTTCTT

Found at i:2573 original size:22 final size:21

Alignment explanation


    Indices: 2526--2573  Score: 60
    Period size: 22  Copynumber: 2.2  Consensus size: 21

       2516 GACTTCCATA

                              *  
       2526 ATTAACTTAATTAATCATCTT
          1 ATTAACTTAATTAATCATATT

            *                *    
       2547 TTTAACCTTAATTAATCCTATT
          1 ATTAA-CTTAATTAATCATATT

                 
       2569 ATTAA
          1 ATTAA

       2574 TAAATATTTG


Statistics
Matches: 22,  Mismatches: 4, Indels: 1
        0.81            0.15        0.04

Matches are distributed among these distances:
  21    4  0.18
  22   18  0.82

ACGTcount: A:0.38, C:0.15, G:0.00, T:0.48


Consensus pattern (21 bp):   
ATTAACTTAATTAATCATATT
Done.