Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003481.1 Kokia drynarioides strain JFW-HI SEQ_116290, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4946
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.32


Found at i:2503 original size:22 final size:21

Alignment explanation


    Indices: 2456--2503  Score: 60
    Period size: 22  Copynumber: 2.2  Consensus size: 21

       2446 GACTTCCATA

                              *  
       2456 ATTAACTTAATTAATCATCTT
          1 ATTAACTTAATTAATCATATT

            *                *    
       2477 TTTAACCTTAATTAATCCTATT
          1 ATTAA-CTTAATTAATCATATT

                 
       2499 ATTAA
          1 ATTAA

       2504 TAAATATTTG


Statistics
Matches: 22,  Mismatches: 4, Indels: 1
        0.81            0.15        0.04

Matches are distributed among these distances:
  21    4  0.18
  22   18  0.82

ACGTcount: A:0.38, C:0.15, G:0.00, T:0.48


Consensus pattern (21 bp):   
ATTAACTTAATTAATCATATT
Done.