Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003493.1 Kokia drynarioides strain JFW-HI SEQ_116319, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 699

Length: 1165
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.37


Found at i:338 original size:12 final size:12

Alignment explanation


    Indices: 323--369  Score: 51
    Period size: 12  Copynumber: 4.0  Consensus size: 12

        313 CTTATTTAAA

                        
        323 AGCTCATTTATT
          1 AGCTCATTTATT

                 *     *
        335 AGCTCGTTTATA
          1 AGCTCATTTATT

                 *      
        347 AGCTCGTTTA-T
          1 AGCTCATTTATT

              *         
        358 AGATCATTTATT
          1 AGCTCATTTATT

        370 TATTAATGAT


Statistics
Matches: 29,  Mismatches: 5, Indels: 2
        0.81            0.14        0.06

Matches are distributed among these distances:
  11    8  0.28
  12   21  0.72

ACGTcount: A:0.26, C:0.15, G:0.13, T:0.47


Consensus pattern (12 bp):   
AGCTCATTTATT

Found at i:528 original size:23 final size:23

Alignment explanation


    Indices: 483--529  Score: 60
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        473 TTATATGTTC

                           *  *    
        483 ATGAACATGTTCGATTAAGTTAA
          1 ATGAACATGTTCGATGAAATTAA

                                    
        506 ATGAACATGTTCG-TGAACATTAA
          1 ATGAACATGTTCGATGAA-ATTAA

             
        529 A
          1 A

        530 CAAACGAACA


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  22    3  0.14
  23   18  0.86

ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32


Consensus pattern (23 bp):   
ATGAACATGTTCGATGAAATTAA
Done.