Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003499.1 Kokia drynarioides strain JFW-HI SEQ_116331, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2153
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29


Found at i:430 original size:21 final size:19

Alignment explanation


    Indices: 404--456  Score: 52
    Period size: 21  Copynumber: 2.6  Consensus size: 19

        394 GGAGTTTTTG

                                 
        404 GTATCGGTAGATGCATGACTT
          1 GTATCGGTAGAT-CAT-ACTT

                  *              
        425 GTATCGATAGAAATCATACTT
          1 GTATCGGTAG--ATCATACTT

            *          
        446 CTATCGGTAGA
          1 GTATCGGTAGA

        457 GCTAGCACAT


Statistics
Matches: 27,  Mismatches: 3, Indels: 6
        0.75            0.08        0.17

Matches are distributed among these distances:
  19    1  0.04
  21   21  0.78
  22    3  0.11
  23    2  0.07

ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32


Consensus pattern (19 bp):   
GTATCGGTAGATCATACTT
Done.