Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003500.1 Kokia drynarioides strain JFW-HI SEQ_116332, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 920

Length: 1534
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.31


Found at i:87 original size:21 final size:22

Alignment explanation


    Indices: 49--125  Score: 61
    Period size: 21  Copynumber: 3.5  Consensus size: 22

         39 CCTATAACTT

                     * *          
         49 CTACCGATATAAGC-ATACAAA
          1 CTACCGATACATGCAATACAAA

                                     
         70 CTACCGATACAT-CAATACTATTAA
          1 CTACCGATACATGCAATAC-A--AA

                      *  *   *    
         94 CTACCGATACTTGTAATTC-AA
          1 CTACCGATACATGCAATACAAA

                       
        115 CTACCGATACA
          1 CTACCGATACA

        126 ACTCAATTTA


Statistics
Matches: 45,  Mismatches: 6, Indels: 10
        0.74            0.10        0.16

Matches are distributed among these distances:
  20    1  0.02
  21   26  0.58
  22    1  0.02
  24   13  0.29
  25    4  0.09

ACGTcount: A:0.40, C:0.26, G:0.08, T:0.26


Consensus pattern (22 bp):   
CTACCGATACATGCAATACAAA
Done.