Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003502.1 Kokia drynarioides strain JFW-HI SEQ_116334, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 816

Length: 1360
ACGTcount: A:0.42, C:0.10, G:0.11, T:0.37


Found at i:459 original size:8 final size:8

Alignment explanation


    Indices: 446--471  Score: 52
    Period size: 8  Copynumber: 3.2  Consensus size: 8

        436 AAATTGGCTT

                    
        446 AAAAATTA
          1 AAAAATTA

                    
        454 AAAAATTA
          1 AAAAATTA

                    
        462 AAAAATTA
          1 AAAAATTA

              
        470 AA
          1 AA

        472 CATAAGTTGA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   18  1.00

ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23


Consensus pattern (8 bp):   
AAAAATTA

Found at i:1338 original size:19 final size:20

Alignment explanation


    Indices: 1316--1356  Score: 57
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       1306 CTTTTATAAA

                       *         
       1316 TTTTATATTTTTTTAC-ATTT
          1 TTTTA-ATTTTCTTACGATTT

                                
       1336 TTTTAATTTTCTTACGATTT
          1 TTTTAATTTTCTTACGATTT

             
       1356 T
          1 T

       1357 ATAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  19    9  0.47
  20   10  0.53

ACGTcount: A:0.20, C:0.07, G:0.02, T:0.71


Consensus pattern (20 bp):   
TTTTAATTTTCTTACGATTT
Done.