genome.fa.s3512.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003512.1 Kokia drynarioides strain JFW-HI SEQ_116348, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  158074

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1291--1372	23	3.5	23	81	5	85	30	9	18	41	1.82
2888--2929	21	1.9	21	85	9	57	47	2	7	42	1.43
13199--13254	17	3.4	16	90	7	85	46	0	1	51	1.11
13256--13307	15	3.9	13	78	19	54	51	21	7	19	1.71
13286--13356	15	4.7	15	87	6	99	40	26	14	18	1.88
13286--13364	30	2.7	29	80	9	97	40	29	12	17	1.87
13978--14007	7	4.3	7	95	0	51	46	0	0	53	1.00
13967--14007	14	3.1	14	86	6	59	46	0	0	53	1.00
15150--15675	59	8.9	59	84	2	666	32	31	3	32	1.76
15151--15708	176	3.2	176	88	4	795	32	31	3	31	1.76
15591--15702	30	3.9	28	73	15	86	29	30	6	33	1.82
15612--15703	30	3.2	28	75	14	89	28	29	7	34	1.85
17774--17802	12	2.5	12	94	5	51	17	10	31	41	1.83
17816--17873	31	1.9	31	89	3	91	55	0	0	44	0.99
17816--17884	31	2.4	30	83	11	90	50	0	1	47	1.09
20843--21000	79	2.0	79	92	0	262	30	12	32	25	1.92
25358--25396	18	2.0	20	90	9	64	74	17	2	5	1.12
46781--46833	9	5.5	10	77	22	60	0	35	0	64	0.94
46800--46832	3	11.0	3	87	12	50	0	33	0	66	0.92
46782--46825	15	3.0	15	86	3	63	0	31	0	68	0.90
61864--62773	455	2.0	455	98	0	1766	38	13	20	27	1.90
64785--64909	37	3.4	37	82	1	151	32	28	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76983--77022	21	1.9	21	85	10	55	65	5	10	20	1.42
77530--77637	37	2.8	39	83	9	152	29	27	19	23	1.98
82078--82188	37	3.0	36	81	6	123	27	32	18	22	1.97
90206--90253	25	1.9	24	87	8	69	64	6	6	22	1.39
90412--90497	30	2.9	29	79	11	93	31	5	26	36	1.80
90412--90507	30	3.2	30	77	12	74	32	6	23	37	1.80
91137--91167	9	3.4	9	90	0	53	22	9	6	61	1.50
91505--91547	20	2.2	20	87	8	61	69	0	0	30	0.88
91866--92075	101	2.1	101	81	1	242	25	18	20	36	1.95
92136--92399	50	5.3	50	77	4	203	25	26	14	34	1.94
92192--92380	100	1.9	100	82	2	236	23	26	16	33	1.96
99596--99807	104	2.0	104	97	0	397	41	10	16	32	1.82
102124--102179	6	9.8	6	74	18	57	1	17	0	80	0.80
102124--102179	17	3.3	16	85	14	69	1	17	0	80	0.80
104960--104991	15	2.2	14	94	5	55	78	6	6	9	1.10
108393--108428	18	2.0	18	100	0	72	33	11	22	33	1.89
116590--116647	30	1.9	31	89	3	91	36	5	20	37	1.75
116625--116683	30	1.9	31	82	3	75	30	6	25	37	1.82
117684--117724	20	2.0	20	86	9	57	75	2	2	19	1.03
121832--121886	26	2.1	27	83	10	69	56	0	0	43	0.99
122496--122553	14	4.2	14	82	4	73	32	27	10	29	1.90
123934--123982	23	2.0	25	85	14	68	51	2	8	38	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125288--125448	87	1.9	86	88	3	243	26	16	19	37	1.92
126582--126634	3	17.7	3	100	0	106	33	0	0	66	0.92
129011--129074	18	3.6	18	77	8	76	35	3	28	32	1.73
129006--129085	36	2.2	36	78	8	92	33	2	30	33	1.71
151771--151800	16	1.9	15	93	6	51	36	0	3	60	1.14
155955--156154	97	2.1	97	99	0	391	46	10	9	34	1.70

Tables:   1

The End!