Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003514.1 Kokia drynarioides strain JFW-HI SEQ_116352, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12203
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37

Warning! 23 characters in sequence are not A, C, G, or T


Found at i:10390 original size:16 final size:17

Alignment explanation


    Indices: 10358--10390  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

      10348 TTTAAATAAA

                   *         
      10358 ATTATTTTAATTAAAAT
          1 ATTATTTCAATTAAAAT

                             
      10375 ATTATTTCAA-TAAAAT
          1 ATTATTTCAATTAAAAT

      10391 GTTTAAATTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  16    6  0.40
  17    9  0.60

ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48


Consensus pattern (17 bp):   
ATTATTTCAATTAAAAT

Found at i:11951 original size:21 final size:21

Alignment explanation


    Indices: 11903--11951  Score: 66
    Period size: 21  Copynumber: 2.3  Consensus size: 21

      11893 AATTTTAAAC

                                 
      11903 ATTTAATATTTTAAATGTTTT
          1 ATTTAATATTTTAAATGTTTT

                                   
      11924 -TTATAATCATTTTAAAT-TTTT
          1 ATT-TAAT-ATTTTAAATGTTTT

                   
      11945 ATTTAAT
          1 ATTTAAT

      11952 TTAAAATTTT


Statistics
Matches: 25,  Mismatches: 0, Indels: 6
        0.81            0.00        0.19

Matches are distributed among these distances:
  20    2  0.08
  21   12  0.48
  22   11  0.44

ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61


Consensus pattern (21 bp):   
ATTTAATATTTTAAATGTTTT
Done.