Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003515.1 Kokia drynarioides strain JFW-HI SEQ_116355, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1865
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.32


Found at i:1272 original size:2 final size:2

Alignment explanation


    Indices: 1265--1296  Score: 64
    Period size: 2  Copynumber: 16.0  Consensus size: 2

       1255 GTTATCACTT

                                                           
       1265 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
          1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA

       1297 TATATATATA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00


Consensus pattern (2 bp):   
CA

Done.