Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003523.1 Kokia drynarioides strain JFW-HI SEQ_116366, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2591
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.32


Found at i:2575 original size:17 final size:17

Alignment explanation


    Indices: 2553--2591  Score: 78
    Period size: 17  Copynumber: 2.3  Consensus size: 17

       2543 ATGAAGGAAA

                             
       2553 AAAGAAAGAAAAAAGAG
          1 AAAGAAAGAAAAAAGAG

                             
       2570 AAAGAAAGAAAAAAGAG
          1 AAAGAAAGAAAAAAGAG

                 
       2587 AAAGA
          1 AAAGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   22  1.00

ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00


Consensus pattern (17 bp):   
AAAGAAAGAAAAAAGAG
Done.