genome.fa.s3526.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003526.1 Kokia drynarioides strain JFW-HI SEQ_116369, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84075

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1639--1680	21	2.0	21	95	0	75	28	7	19	45	1.76
5979--6006	2	14.0	2	100	0	56	50	0	0	50	1.00
8558--8600	21	2.1	21	86	4	61	37	4	9	48	1.56
11502--11561	3	20.0	3	77	6	59	1	36	0	61	1.06
14906--15092	51	3.6	50	79	5	169	33	14	22	28	1.94
15042--15217	61	2.9	61	86	3	241	35	13	22	28	1.92
22087--22265	51	3.5	50	83	4	205	31	15	24	28	1.95
22214--22392	61	3.0	60	86	1	234	32	12	24	30	1.92
24982--25006	12	2.1	12	100	0	50	36	8	16	40	1.77
32931--32971	2	20.5	2	92	0	64	51	2	0	46	1.14
35129--35164	15	2.4	15	90	0	54	52	0	16	30	1.44
41571--41636	31	2.1	31	91	5	107	51	13	16	18	1.76
45417--45597	28	6.5	28	83	3	186	25	15	23	35	1.94
45417--45597	56	3.2	56	85	2	231	25	15	23	35	1.94
45417--45597	84	2.2	83	81	3	220	25	15	23	35	1.94
45963--46006	19	2.3	19	84	4	52	27	13	15	43	1.85
46433--46508	22	3.6	22	89	5	113	18	18	42	21	1.90
52770--52869	34	3.1	34	68	16	102	40	9	14	37	1.77
53221--53265	19	2.4	20	82	14	60	57	17	8	15	1.63
59014--59076	22	2.9	22	82	0	81	33	20	12	33	1.90
59104--59167	22	2.9	22	85	0	92	32	21	14	31	1.93
59014--59192	91	2.0	91	88	2	270	30	17	13	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62455--62563	4	26.2	4	74	18	57	22	5	3	67	1.27
62406--62513	37	2.8	37	79	12	94	21	3	5	69	1.25
62461--62512	19	2.7	19	85	8	70	21	5	3	69	1.26
62859--62913	23	2.3	24	78	9	60	27	3	9	60	1.44
71586--71942	95	3.7	95	84	3	437	39	18	21	21	1.92
71511--71956	98	4.6	97	80	9	446	39	17	22	20	1.92
71458--71993	49	11.1	49	72	7	349	40	17	22	19	1.91
71942--72075	70	1.9	70	83	3	171	41	14	24	18	1.89
72142--72248	49	2.2	49	81	5	117	42	23	18	14	1.88
72864--72908	24	1.9	24	90	4	74	35	11	11	42	1.76
73243--73361	4	29.8	4	70	23	58	22	3	3	70	1.17
73207--73359	15	10.4	14	67	21	82	21	2	4	71	1.17
73243--73360	19	6.3	19	68	15	61	22	3	3	70	1.17
73307--73356	25	2.0	25	84	7	66	28	4	2	66	1.21
73293--73371	40	2.0	41	82	2	97	27	5	2	64	1.27
84046--84075	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1

The End!