Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003537.1 Kokia drynarioides strain JFW-HI SEQ_116382, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12077
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:463 original size:4 final size:4

Alignment explanation


    Indices: 456--502  Score: 69
    Period size: 4  Copynumber: 12.0  Consensus size: 4

        446 AAATACACAC

                                               *                *      
        456 ACAT ACAT ACAT AC-T ACAT ACAT ACAT GCAT ACAT ACAT ACGT ACAT
          1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT

        503 TTGATATTAA


Statistics
Matches: 38,  Mismatches: 4, Indels: 2
        0.86            0.09        0.05

Matches are distributed among these distances:
   3    3  0.08
   4   35  0.92

ACGTcount: A:0.45, C:0.26, G:0.04, T:0.26


Consensus pattern (4 bp):   
ACAT

Found at i:11169 original size:23 final size:23

Alignment explanation


    Indices: 11143--11206  Score: 119
    Period size: 23  Copynumber: 2.8  Consensus size: 23

      11133 AAAATTTTTT

                                   
      11143 AAATATTTTAATAATTAAAATAA
          1 AAATATTTTAATAATTAAAATAA

                                   
      11166 AAATATTTTAATAATTAAAATAA
          1 AAATATTTTAATAATTAAAATAA

                    *         
      11189 AAATATTTAAATAATTAA
          1 AAATATTTTAATAATTAA

      11207 TGATCATTTT


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  23   40  1.00

ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39


Consensus pattern (23 bp):   
AAATATTTTAATAATTAAAATAA
Done.