Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003538.1 Kokia drynarioides strain JFW-HI SEQ_116383, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1908
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.34


Found at i:297 original size:4 final size:4

Alignment explanation


    Indices: 282--328  Score: 69
    Period size: 4  Copynumber: 12.0  Consensus size: 4

        272 TTAATATCAA

                  *                *                                   
        282 ATGT ACGT ATGT ATGT ATGC ATGT ATGT ATGT A-GT ATGT ATGT ATGT
          1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT

        329 GTGTGTATTT


Statistics
Matches: 38,  Mismatches: 4, Indels: 2
        0.86            0.09        0.05

Matches are distributed among these distances:
   3    3  0.08
   4   35  0.92

ACGTcount: A:0.26, C:0.04, G:0.26, T:0.45


Consensus pattern (4 bp):   
ATGT

Done.